Welcome to the SI Barcode Network Informatics Documentation!

This documentation site describes the best practices for the informatics pipeline of the SI Barcode Network.

Updates

https://img.shields.io/badge/Biocode%20Plugin%20Version-3.0.14-green.svg https://img.shields.io/badge/GenBank%20Upload%20Plugin%20Version-1.6.7-green.svg
24 February, 2021
The Biocode plugin was updated to fix issues with large tissue queries against GEOME failing.
15 February, 2021
The Genbank submission plugin was updated to version 1.6.8, to include substitution of disallowed characters with hyphens to prevent submission failure, and an improved error message regarding non-ASCII characters.
1 October, 2020
The Biocode plugin was updated to fix an issue with detecting duplicate column names when annotating with FIMS data.
6 March, 2019
The Biocode plugin now includes the following fields: genbankCountry, genbankDate, and genbankLatLng.
26 November, 2018
The GenBank submission plugin was updated to version 1.6.7, correcting a few issues regarding annotations, as well as other small updates. You can view the full list of features and updates here.
11 September, 2017
Biocode plugin updated to fix problem where the Biocode FIMS only retrieved field definitions from the Barcode of Wildlife project instead of the project that was specified. This would result in empty tissue fields.
20 September, 2016
The GenBank submission plugin was updated to version 1.6.5 with many minor bug fixes. The most important one to the SI Federal Barcoding Project is that the plugin will now attemp to replace non-ASCII characters (such as accented characters) with equivalent ASCII characters. This has been a problem in the past, since the previous default action was to simply omit these characters.
15 June, 2016
The Biocode Plugin was updated to version 3.0.0, and the GenBank Upload Plugin was updated to version 1.6.4. You can read about the updates to the Biocode Plugin here. You can read about the updates to the GenBank Upload Plugin here.