SI Barcode Network Informatics Documentation
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Background
Workflow
Software components
Software Updates
Barcode Data Standard
Naming Conventions
FIMS
Populating the FIMS Spreadsheet
FIMS Validation and Upload
LIMS
Geneious Prime Introduction
Connecting with the Biocode Plugin
Generating Extraction Plates
Generating PCR Plates
Generating Cycle Sequencing Plates
Cherry Picking
Assembly and Quality Control
Downloading Traces from LIMS
Assembling Contigs
Quality Control of Assembled Contigs
Using the Batch Rename Function
Annotating with FIMS/LIMS Data
Reaction Status in LIMS
Exporting Sequences in FASTA format
Exporting Sequence Metadata in TSV format
Running NCBI BLAST to Compare Taxonomic IDs
Data Publication
GenBank Upload Pipeline 1: GenBank Submission Portal
GenBank Upload Pipeline 2: Geneious Prime GenBank Submission Tool
Annotating Sequences for GenBank Submission
Rapid Data Release Policy
Updating Existing GenBank Records
NCBI BioProjects
Tips for BOLD Upload
SI Barcode Network Informatics Documentation
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